SC61B: The Cell's Master Gatekeeper or a Key to Disease?

Uncover SC61B, a key protein in cellular transport. Learn its function, role in polycystic liver disease and cancer, and its drug target potential.

Ailurus Press
October 25, 2025
5 min read

Imagine your body's cells as bustling, microscopic cities. Every second, these cities manufacture millions of proteins—the workers, messengers, and structural components that keep everything running. But making a protein is only half the battle. It must be delivered to its correct destination to do its job. This is where the cell's sophisticated logistics network comes in, and at its heart lies a critical checkpoint: the endoplasmic reticulum (ER). Standing guard at the gate to this network is a molecular complex, and today's protagonist, a surprisingly small protein named SC61B, plays a vital role within it.

The Molecular Doorman at the ER's Gate

SC61B, also known as protein transport protein Sec61 subunit beta, is a marvel of efficiency. Comprising just 96 amino acids, it's a tiny component of the much larger SEC61 translocon complex, the cell's primary gateway for proteins entering the secretory pathway [1]. Think of the SEC61 complex as a highly secure channel embedded in the ER membrane. SC61B acts as an essential structural brace for this channel, ensuring its stability and proper function.

Its structure is elegantly simple: a short domain inside the cell, a single helix that passes through the ER membrane, and a tiny tail poking into the ER's interior [1]. For years, the precise architecture of this complex was a mystery. However, with the advent of cryo-electron microscopy (cryo-EM), scientists have been able to capture near-atomic resolution images of the SEC61 complex in action [2, 3]. These stunning snapshots reveal how SC61B integrates with its partners, Sec61α and Sec61γ, to form a dynamic channel that opens to accept newly made proteins and then ushers them across the membrane.

More Than Just a Transporter

SC61B's main job is to help the SEC61 complex act as a quality control checkpoint and transport hub. It ensures that proteins destined for secretion, for embedding in the cell membrane, or for delivery to other organelles are correctly processed [1]. It helps the translocon recognize the "shipping labels" (signal peptides) on these proteins and facilitates their journey.

But science is full of surprises. Recent research has unveiled an unexpected second role for SC61B. Beyond protein transport, it appears to function as a regulator of calcium levels within the cell [4]. In certain cells, like platelets, SC61B can act as a subtle "leak channel" in the ER membrane, influencing calcium flux. This discovery has profound implications, linking this fundamental protein to conditions like platelet hyperreactivity in diabetes mellitus [4]. This dual functionality highlights a common theme in biology: proteins often wear multiple hats, participating in a complex interplay of cellular processes we are only just beginning to understand.

When the Gatekeeper Fails

What happens when this crucial doorman is faulty? The consequences can be severe. In recent years, genetic studies have directly linked loss-of-function mutations in the SEC61B gene to a debilitating condition called autosomal dominant polycystic liver disease (PCLD) [1, 5]. In affected individuals, the liver develops numerous fluid-filled cysts, which can grow to a point where they cause significant pain and impair organ function. The discovery that a faulty protein transport component could lead to this disease underscores how critical proper protein processing is for maintaining organ health.

Furthermore, SC61B's role as a gatekeeper has made it an unexpected target in the fight against cancer. Many cancer cells, particularly those in multiple myeloma, are protein-secreting factories gone into overdrive. They are "addicted" to producing and exporting vast quantities of proteins to fuel their growth and survival. This addiction makes them highly dependent on a functional SEC61 translocon, creating a critical vulnerability [6, 7]. Researchers have found that blocking the SEC61 channel with natural compounds like mycolactone or coibamide A can effectively starve these cancer cells, offering a promising new therapeutic strategy [7, 8].

Decoding the Future: New Tools for an Old Gate

The future of SC61B research is bright, fueled by technological innovation and a drive to translate these fundamental discoveries into clinical solutions. Scientists are now focused on developing "client-selective" inhibitors—drugs that can block the transport of specific disease-causing proteins while leaving essential ones untouched [9]. This precision approach could lead to more effective therapies with fewer side effects.

However, developing these next-generation drugs requires a deeper understanding of the protein's function, which presents significant technical challenges. Producing complex membrane proteins like SC61B for structural studies or drug screening is a major bottleneck. However, innovative platforms like Ailurus Bio's PandaPure are emerging, using engineered organelles to simplify purification, potentially accelerating the characterization of targets like SC61B.

Moreover, to map the vast landscape of mutations and their effects, researchers need to test thousands of variations to see which ones are benign and which ones lead to disease. Self-selecting vector libraries, such as Ailurus vec, offer a path to screen massive genetic libraries in a single batch, rapidly identifying optimal constructs for expression or functional studies and generating the large-scale data needed for AI-driven discovery.

From a humble structural component to a key player in disease and a promising drug target, SC61B's story is a testament to the hidden complexities within our cells. As we continue to develop more powerful tools to probe its secrets, we move closer to harnessing its power for a new generation of precision medicines.

References

  1. UniProt Consortium. (n.d.). P60468 · SC61B_HUMAN. UniProtKB. https://www.uniprot.org/uniprotkb/P60468/entry
  2. Voorhees, R. M., Becker, T., et al. (2014). Structure of the mammalian ribosome-Sec61 complex to 3.4 Å resolution. Cell, 157(7), 1632-1643.
  3. Itskanov, S., & Park, E. (2022). Structural analysis of the dynamic ribosome-translocon complex. eLife, 11, e95814.
  4. Singh, Y., et al. (2024). SEC61B regulates calcium flux and platelet hyperreactivity in diabetes. bioRxiv.
  5. D'Gama, M., et al. (2022). Polycystic Liver Disease: Pathophysiology, Diagnosis and Treatment. Hepatic Medicine: Evidence and Research, 14, 105-115.
  6. An, N., et al. (2021). The Sec61 translocon is a therapeutic vulnerability in multiple myeloma. EMBO Molecular Medicine, 13(10), e14740.
  7. Paatero, A. O., et al. (2021). The Sec61 translocon is a therapeutic vulnerability in multiple myeloma. Pasteur Institute.
  8. Le, G. M., et al. (2020). Coibamide A Targets Sec61 to Prevent Biogenesis of Secretory and Membrane Proteins. ACS Chemical Biology, 15(7), 1793-1800.
  9. Zong, M., et al. (2023). Signal peptide mimicry primes Sec61 for client-selective inhibition. Nature Chemical Biology, 19(8), 978-988.

About Ailurus

Ailurus Bio is a pioneering company building biological programs, genetic instructions that act as living software to orchestrate biology. We develop foundational DNAs and libraries, transforming lab-grown cells into living instruments that streamline complex research and production workflows. We empower scientists and developers worldwide with these bioprograms, accelerating discovery and diverse applications. Our mission is to make biology the truly general-purpose technology, as programmable and accessible as modern computers, by constructing a biocomputer architecture for all.

For more information, visit: ailurus.bio
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